Introduction
As explained in the Extensions and Integrations Guide, KNIME Analytics Platform can be enhanced with additional functionality provided by a vast array of extensions and integrations. Often, installing an extension adds a collection of new nodes to the node repository of KNIME Analytics Platform.
With the v4.6 release of KNIME Analytics Platform, we introduce the possibility to write KNIME node extensions completely in Python. This includes the ability to define node configuration and execution, as well as dialog definition. A Pythonic API to design those nodes is now available, as well as debugging functionality within KNIME Analytics Platform. This means deploying pure-Python KNIME extensions containing nodes – including their Python environment needed for execution – using a locally built update site is now possible.
In this guide, we offer a tutorial to get you started with writing your KNIME nodes using Python, as well as how to setup a shareable Python extension containing your nodes, together with a complete definition of the API.
Quickstart Tutorial
This section provides a basic extension template, and walks you through the essential development steps to help you get started with using the API.
Prerequisites
-
Set up
conda
.To get started with developing Python node extensions, you need to have
conda
installed. Here is the quickest way: -
With
conda
set up, extract basic.zip to a convenient location.In the
basic
folder, you should see the following file structure:. ├── tutorial_extension │ │── icon.png │ │── knime.yml │ │── LICENSE.TXT │ └── my_extension.py ├── config.yml ├── my_conda_env.yml ├── Example_with_Python_node.knwf └── README.md
-
During development, you can edit the source files in any text editor. However, in order to make use of autocompletion for the API, as well as to allow debugging via the
debugpy
package, we recommend using an editor that is able to setconda
environments as the Python interpreter. Here are the setup steps for Visual Studio Code:-
Download and install Visual Studio Code
-
Install the Python extension
-
In the bottom right corner of the editor, you should be able to select the Python interpreter that you would like to use during development. After Step 4 of Tutorial 1, you will have the
my_python_env
environment available in the list of Python interpreters. By selecting the environment, you will be able to make full use of autocompletion.
-
Writing your first Python node from scratch
This is a quickstart guide that will walk you through the essential
steps of writing and running your first Python node extension containing a single node. We will
use tutorial_extension
as the basis. The steps of the tutorial
requiring modification of the Python code in my_extension.py
have
corresponding comments in the file, for convenience.
For an extensive overview of the full API, please refer to the Defining a KNIME Node in Python: Full API section, as well as our Read the Docs page.
-
Install KNIME Analytics Platform version 4.6.0 or higher.
-
Go to File → Install KNIME Extensions…, enter ''Python'' in the search field, and look for KNIME Python Extension Development (Labs). Alternatively, you can manually navigate to the KNIME Labs Extensions category and find the extension there. Select it and proceed with installation.
-
The
tutorial_extension
will be your new extension. Familiarize yourself with the files contained in that folder, in particular:-
knime.yml
, which contains important metadata about your extension. -
my_extension.py
, which contains Python definitions of the nodes of your extension. -
config.yml
, just outside of the folder, which contains the information that binds your extension and the correspondingconda
/Python environment with KNIME Analytics Platform.
-
-
Create a
conda
/Python environment containing theknime-python-base
metapackage, together with the node development APIknime-extension
for the KNIME Analytics Platform you are using. If you are usingconda
, you can create the environment by running the following command in your terminal (macOS/Linux) or Anaconda Prompt (Windows):conda create -n my_python_env python=3.11 knime-python-base=5.4 knime-extension=5.4 -c knime -c conda-forge
If you would like to install the packages into an environment that already exists you can run the following command from within that environment:
conda install knime-python-base=5.4 knime-extension=5.4 -c knime -c conda-forge
Note that you must append both the
knime
andconda-forge
channels to the commands to install the mandatory packages. To install additional packages, for your specific use case, we recommend using theconda-forge
channel.conda install -c conda-forge <additional_pkg_name>
-
Edit the
config.yml
file located just outside of thetutorial_extension
(for this example, the file already exists with prefilled fields and values, but you would need to manually create it for future extensions that you develop). The contents should be as follows:<extension_id>: src: <path/to/folder/of/template> conda_env_path: <path/to/my_python_env> debug_mode: true
where:
-
<extension_id>
should be replaced with thegroup_id
andname
values specified inknime.yml
, combined with a dot.For our example extension, the value for
group_id
isorg.tutorial
, and the value forname
isfirst_extension
, therefore the<extension_id>
placeholder should be replaced withorg.tutorial.first_extension
. -
The
src
field should specify the path to thetutorial_extension
folder.For instance,
/Users/Bobby/Development/python_extensions/tutorial_extension
-
Similarly, the
conda_env_path
field should specify the path to theconda
/Python environment created in Step 4. To get this path, run theconda env list
command in your Terminal/Anaconda Prompt, and copy the path displayed next to the appropriate environment (my_python_env
in our case). -
The
debug_mode
is an optional field, which, if set totrue
, will tell KNIME Analytics Platform to use the latest changes in theconfigure
andexecute
methods of your Python node class whenever those methods are called.Enabling debug_mode
will affect the responsiveness of your nodes.
-
-
We need to let KNIME Analytics Platform know where the
config.yml
is in order to allow it to use our extension and its Python environment. To do this, you need to edit theknime.ini
of your KNIME Analytics Platform installation, which is located at<path-to-your-KAP>/knime.ini
.Append the following line to the end, and modify it to have the correct path to
config.yml
:-Dknime.python.extension.config=<path/to/your/config.yml>
The forward slash /
has to be used on all OS, also on Windows. -
Start your KNIME Analytics Platform.
-
The ''My Template Node'' node should now be visible in the Node Repository.
-
Import and open the
Example_with_Python_node.knwf
workflow, which contains our test node:-
Get familiar with the table.
-
Study the code in
my_extension.py
and compare it with the node you see in KNIME Analytics Platform. In particular, understand where the node name and description, as well as its inputs and outputs, come from. -
Execute the node and make sure that it produces an output table.
-
-
Build your first configuration dialog:
In
my_extension.py
, uncomment the definitions of parameters (marked by the ''Tutorial Step 10'' comment). Restart your KNIME Analytics Platform, re-drag your node from the node repository into the workflow, and you should be able to double-click the node and see configurable parameter.Take a minute to see how the names, descriptions, and default values compare between their definitions in
my_extension.py
and the node dialog. -
Add your first port:
To add a second input table to the node, follow these steps (marked by the ''Tutorial Step 11'' comment; you will need to restart KNIME Analytics Platform):
-
Uncomment the
@knext.input_table
decorator. -
Change the
configure
method’s definition to reflect the changes in the schema. -
Change the
execute
method to reflect the addition of the second input table.
-
-
Add some functionality to the node:
With the following steps, we will append a new column to the first table and output the new table (the lines requiring to be changed are marked by the ''Tutorial Step 12'' comment):
-
To inform downstream nodes of the changed schema, we need to change it in the return statement of the
configure
method; for this, we append metadata about a column to the output schema. -
Everything else is done in the
execute
method:-
we transform both input tables to pandas dataframes and append a new column to the first dataframe
-
we transform that dataframe back to a KNIME table and return it
-
-
-
Use your parameters:
-
In the
execute
method, uncomment the lines marked by the ''Tutorial Step 13'' comment. -
Use a parameter to change some table content; we will use a lambda function for a row-wise multiplication using the
double_param
parameter.
-
-
Start logging and setting warnings:
Uncomment the lines marked by "Tutorial Step 14" in the
execute
method:-
Use the
LOGGER
functionality to inform users, or for debugging. -
Use the
execute_context.set_warning("A warning")
to inform users about unusual behaviour. -
If you want the node to fail, you can raise an exception. For instance:
raise ValueError("This node failed just because")
.
-
-
Congratulations, you have built your first functioning node entirely in Python!
Python Node Extension Setup
A Python node extension needs to contain a YAML file called knime.yml
that gives general information about the node extension, which Python
module to load, and what conda environment should be bundled with the extension.
name: myextension # Will be concatenated with the group_id to form the extension ID
author: Jane Doe
env_yml_path: # Path to the Conda environment yml, from which the environment for this extension will be built when bundling
extension_module: my_extension # The .py Python module containing the nodes of your extension
description: My New Extension # Human readable bundle name / description
long_description: This extension provides functionality that everyone wants to have. # Text describing the extension (optional)
group_id: org.knime.python3.nodes # Will be concatenated with the name to form the extension ID
version: 0.1.0 # Version of this Python node extension. Must use three-component semantic versioning for deployment to work.
vendor: KNIME AG, Zurich, Switzerland # Who offers the extension
license_file: LICENSE.TXT # Best practice: put your LICENSE.TXT next to the knime.yml; otherwise you would need to change to path/to/LICENSE.txt
#Optional: If you do not have dependencies on other extensions, you do not need feature_depencendies and their entries
feature_dependencies:
- org.knime.features.chem.types 5.4.0 # If you want to specify the version - note that this specifies the version being greater equal 5.4.0
- org.knime.features.chem.types # If the version does not matter
The id
of the extension will be of the form group_id.name
. It needs
to be a unique identifier for your extension, so it is a good idea to
encode your username or company’s URL followed by a logical structure as
group_id
in order to prevent id
clashes. For example, a developer
from KNIME could encode its URL to org.knime
and add
python3
to indicate that the extension is a member of nodes
, which are part of python3
.
Feature dependencies: if your extension depends on another extension, you can specify it as a
bullet point of feature_dependencies
. Optionally, you can add a specific minimum version to it.
Example: You use data types like SmilesValue
of the KNIME Base Chemistry Types & Nodes
extension in your extension. You have that extension already installed and want to make sure
that everybody who uses your extension will also have this extension installed. Then you can
go to Help > About KNIME Analytics Platform > Installation Details and check the id of
KNIME Base Chemistry Types & Nodes
, which is org.knime.features.chem.types.feature.group
.
Take the id without .feature.group
and you have the string of the feature dependency:
org.knime.features.chem.types
Note that the env_yml_path
field, which specified the path to the YAML configuration of the
conda
environment required by your extension, is needed when bundling your extension.
During development, KNIME Analytics Platform uses the environment specified in the config.yml
file.
The path containing the knime.yml
will then be put on the Pythonpath
, and the extension module specified in the YAML will be imported
by KNIME Analytics Platform using import <extension_module>
. This Python
module should contain the definitions of KNIME nodes. Each class
decorated with @knext.node
within this file will become available in
KNIME Analytics Platform as a dedicated node.
Recommended project folder structure:
. ├── my_extension │ ├── icons │ │ └── my_node_icon.png │ ├── knime.yml │ ├── LICENSE.txt │ ├── my_conda_env.yml │ └── my_extension.py └── config.yml
See Tutorial 1 above for an example.
Development and distribution
As you develop your Python extension, you are able to run and debug it locally by setting the knime.python.extension.config
system property in your KNIME Analytics
Platform’s knime.ini
to point to the config.yml
, or in the launch configuration’s VM arguments in Eclipse. See the
Registering Python extensions during development
and
Customizing the Python executable sections at the end of this guide for more information.
In order to share your Python extension with others, please refer to the Bundling your Python Extension Nodes section.
Defining a KNIME Node in Python: Full API
We provide a conda
package that includes the full API for node
development in Python - knime-extension
(see
Tutorial 1 for help in setting up your development
conda
environment). To enable
helpful code autocompletion via import knime.extension as knext
, make
sure your IDE of choice’s Python interpreter is configured to work in
that conda
environment when you are developing your Python node
extension (see
here
for help with Visual Studio Code,
here
for PyCharm, here for Sublime Text, or here for general information on integrating your IDE with conda
).
A Python KNIME node needs to implement the configure
and execute
methods, so it will generally be a class. The node description is
automatically generated from the docstrings of the class and the
execute
method. The node’s location in KNIME Analytics Platform’s
Node Repository, as well as its icon, are specified in the @knext.node
decorator.
A simple example of a node does nothing but pass an input table to its
output unmodified. Below, we define a class MyNode
and indicate that
it is a KNIME node by decorating it with @knext.node
. We then
''attach'' an input table and an output table to the node by decorating
it with @knext.input_table
and @knext.output_table
respectively.
Finally, we implement the two required methods, configure
and
execute
, which simply return their inputs unchanged.
import knime.extension as knext
@knext.node(name="My Node", node_type=knext.NodeType.MANIPULATOR, icon_path="..icons/icon.png", category="/")
@knext.input_table(name="Input Data", description="The data to process in my node")
@knext.output_table("Output Data", "Result of processing in my node")
class MyNode:
"""Short description is in the first line next to the three double quotes here. It it displayed in overviews when a whole category in the node repository is selected.
Here begins the normal description: This node description will be displayed in KNIME Analytics Platform.
"""
def configure(self, config_context, input_table_schema):
return input_table_schema
def execute(self, exec_context, input_table):
return input_table
`@knext.node’s configuration options are:
-
name: the name of the node in KNIME Analytics Platform.
-
node_type: the type of the node, one of:
-
knext.NodeType.MANIPULATOR
: a node that manipulates data. -
knext.NodeType.LEARNER
: a node learning a model that is typically consumed by a PREDICTOR. -
knext.NodeType.PREDICTOR
: a node that predicts something typically using a model provided by a LEARNER. -
knext.NodeType.SOURCE
: a node producing data. -
knext.NodeType.SINK
: a node consuming data. -
knext.NodeType.VISUALIZER
: a node that visualizes data. -
knext.NodeType.OTHER
: a node that doesn’t fit any of the other node types.
-
-
icon_path: module-relative path to a 16x16 pixel PNG file to use as icon.
-
category: defines the path to the node inside KNIME Analytics Platform’s Node Repository.
Defining custom port objects
Besides tables, a node can also consume or produce other port objects and it is possible to define custom port objects for your extension.
You can do so by extending knext.PortObject
and knext.PortObjectSpec
with your custom implementation.
In order to use these objects in your node, you need to define a custom port type via the knext.port_type
function that takes your PortObject
and PortObjectSpec
classes as well as a human-readable name for your port type and an optional id.
Here is an example:
Let’s start with the PortObjectSpec
:
import knime.extension as knext
class MyPortObjectSpec(knext.PortObjectSpec):
def __init__(self, spec_data: str) -> None:
super().__init__()
self._spec_data = spec_data
def serialize(self) -> dict:
return {"spec_data": self._spec_data}
@classmethod
def deserialize(cls, data: dict) -> "MyPortObjectSpec":
cls(data["spec_data"])
@property
def spec_data(self) -> str:
return self._data
The serialize
and deserialize
methods are used by the framework to store and load the spec.
Note: The deserialize
method must be a classmethod
.
The spec_data
property is just an example for custom code and you can add arbitrary methods to your spec class as you see fit.
Next we implement the PortObject
:
import pickle
class MyPortObject(knext.PortObject):
def __init__(self, spec: MyPortObjectSpec, model) -> None:
super().__init__(self, spec)
self._model = model
def serialize(self) -> bytes:
return pickle.dumps(self._model)
@classmethod
def deserialize(cls, spec: MyPortObjectSpec, data: bytes) -> "MyPortObject":
return cls(spec, pickle.loads(data))
def predict(self, data):
return self._model.predict(data)
The PortObject class must have a serialize
and deserialize
method that are called by the framework to persist and restore the object. Again note that deserialize
has to be a classmethod
.
The predict
property is again just an example for custom code that your port object class may contain.
Finally, we create a custom port type to be used as input or output of a node:
my_model_port_type = knext.port_type(name="My model port type", object_class=MyPortObject, spec_class=MyPortObjectSpec)
The knext.port_type
method ties the PortObject
and PortObjectSpec
together and provides a human-readable name to refer to the custom port type.
It is also possible to specify a custom ID for the port type via the id
argument. Note that the id must be unique! If you don’t provide a custom ID, then the framework generates one of the format your_extension_id.your_module_name.your_port_object_class_name
. For example if your extension has the id org.company.extension
and you implement a MyPortObject
in the module my_extension
, then the generated id is org.company.extension.my_extension.MyPortObject
.
Note that there are also connection port objects that can hold non-serializable objects.
You can find information about that in the API documentation for knime.extension.ConnectionPortObject
.
Check out the next section to learn how to declare your custom port type as input or output of your node.
Node port configuration
The input and output ports of a node can be configured by decorating the
node class with @knext.input_table
, @knext.input_port
, and
respectively @knext.output_table
and @knext.output_port
.
An image output port can be added with the @knext.output_image
decorator.
Additionally, a node producing a view should be decorated with the
@knext.output_view
decorator.
These port decorators have the following properties:
-
they take
name
anddescription
arguments, which will be displayed in the node description area inside KNIME Analytics Platform; -
they must be positioned after the
@knext.node
decorator and before the decorated object (e.g. the node class); -
their order determines the order of the port connectors of the node in KNIME Analytics Platform.
The @knext.input_table
and @knext.output_table
decorators configure
the port to consume and respectively produce a KNIME table.
The @knext.output_image
decorator configures the port to produce a PNG or SVG
image.
If you want to receive or send other data, e.g. a trained machine
learning model, use @knext.input_port
and @knext.output_port
.
These decorators have an additional argument, port_type
, used to identify the
type of port objects going along this port connection. Only ports with equal
port_type
can be connected. See the previous section to learn how to specify your own port type.
The port configuration determines the expected signature of the
configure
and execute
methods:
-
In the
configure
method, the first argument is aConfigurationContext
, followed by one argument per input port. The method is expected to return as many parameters as it has output ports configured. The argument and return value types corresponding to the input and output ports are:-
for table ports, the argument/return value must be of type
knext.Schema
. If the return table consists of only one column, the return value can also be of typeknext.Column
; -
for image ports, the argument/return value must be of type
knext.ImagePortObjectSpec
with the appropriate image format configured -
for custom ports, the argument/return value must be of your custom implementation of
knext.PortObjectSpec
. If we take the example from the previous section, the type would beMyPortObjectSpec
.Note that the order of the arguments and return values must match the order of the input and output port declarations via the decorators.
-
-
The arguments and expected return values of the
execute
method follow the same schema: one argument per input port, one return value per output port. For image outputs the returned value must be of the typebytes
.
Examples how to use knext.Schema
and knext.Column`
(see the API):
def configure(self, config_context): # no input table """ This node creates a table with a single column """ ktype = knext.string() # OR ktype = knext.int32() # OR knext.double(), knext.bool_(), knext.list_(knext.string()), knext.struct(knext.int64(), knext.bool_()),... # OR import datetime ktype = datetime.datetime return knext.Column(ktype, "Date and Time")
def configure(self, config_context): # no input table """ This node creates two tables with two columns each """ ktype1 = knext.string() import knime.types.chemistry as cet # needs the extension `KNIME Base Chemistry Types & Nodes` installed ktype2 = cet.SdfValue schema1 = knext.Schema([ktype1, ktype2], ["Column with Strings", "Column with Sdf"]) schema2 = knext.Schema([ktype1, ktype2], ["Another column with Strings", "Another column with Sdf"]) return schema1, schema2
All supported types of your current environment can be obtained by printing
knime.api.schema.supported_value_types() or knime.extension.supported_value_types()` .
|
Here is an example with two input ports and one output port. See the previous session for the definitions of MyPortObject
, MyPortObjectSpec
and my_model_port_type
.
@knext.node("My Predictor", node_type=knext.NodeType.PREDICTOR, icon_path="icon.png", category="/")
@knext.input_port("Trained Model", "Trained fancy machine learning model", port_type=my_model_port_type)
@knext.input_table("Data", "The data on which to predict")
@knext.output_table("Output", "Resulting table")
class MyPredictor():
def configure(self, config_context: knext.ConfigurationContext, input_spec: MyPortObjectSpec, table_schema: knext.Schema) -> knext.Schema:
# We will add one column of type double to the table
return table_schema.append(knext.Column(knext.double(), "Predictions"))
# If you want to use types known to KNIME, but that have no dedicated KNIME type, you could use:
# import datetime
# return table_schema.append(knext.Column(datetime.datetime, "Date and Time"))
def execute(self, exec_context: knext.ExecutionContext, trained_model: MyPortObject, input_table: knext.Table) -> knext.Table:
predictions = trained_model.predict(input_table.to_pandas())
output_table = input_table
output_table["Predictions"] = predictions
return knext.Table.from_pandas(output_table)
Example with two image output ports.
@knext.node("My Image Generator", node_type=knext.NodeType.SOURCE, icon_path="icon.png", category="/")
@knext.output_image(name="PNG Output Image", description="An example PNG output image")
@knext.output_image(name="SVG Output Image", description="An example SVG output image")
class ImageNode:
def configure(self, config_context):
return (
knext.ImagePortObjectSpec(knext.ImageFormat.PNG),
knext.ImagePortObjectSpec(knext.ImageFormat.SVG),
)
def execute(self, exec_context):
x = [1, 2, 3, 4, 5]
y = [1, 2, 3, 4, 5]
fig, ax = plt.subplots(figsize=(5, 5), dpi=100)
ax.plot(x, y)
buffer_png = io.BytesIO()
plt.savefig(buffer_png, format="png")
buffer_svg = io.BytesIO()
plt.savefig(buffer_svg, format="svg")
return (
buffer_png.getvalue(),
buffer_svg.getvalue(),
)
Alternatively, you can populate the input_ports
and output_ports
attributes of your node class (on class or instance level) for more fine
grained control.
Specifying the node category
Each node in your Python node extension is assigned a category via
the category
parameter of the @knext.node
decorator, which dictates
where the node will be located in the node repository of KNIME
Analytics Platform. Without an explicit category, the node will be placed
in the root of the node repository, thus you should always specify a
category for each node.
In order to define a custom category for the nodes of your extension,
you can use the knext.category
helper function. If autocompletion is
enabled in your IDE, you should be able to see the list of the expected
parameters of the function, together with their detailed description.
If you are a community developer, you should use the Community Nodes
category as the parent category of your Python node extensions. This is
done by specifying the path="/community"
parameter of the
knext.category
function:
import knime.extension as knext
my_category = knext.category(
path="/community",
level_id="my_extension",
name="My Extension",
description="My Python Node Extension.",
icon="icon.png",
)
@knext.node(
name="My Node",
node_type=knext.NodeType.PREDICTOR,
icon_path="icon.png",
category=my_category
)
...
class MyNode():
...
.
Note that it is possible to further split your custom category into
subcategories. This is useful if, for instance, nodes of your extension
can be grouped based on their functionality. By first defining a parent
category for the node extension, you can then use it as the path
parameter
when defining the subcategories:
import knime.extension as knext
# define the category and its subcategories
main_category = knext.category(
path="/community",
level_id="my_extension",
name="scikit-learn Extension",
description="Nodes implementing various scikit-learn algorithms.",
icon="icon.png",
)
supervised_category = knext.category(
path=main_category,
level_id="supervised_learning",
name="Supervised Learning",
description="Nodes for supervised learning.",
icon="icon.png",
)
unsupervised_category = knext.category(
path=main_category,
level_id="unsupervised_learning",
name="Unsupervised Learning",
description="Nodes for unsupervised learning.",
icon="icon.png",
)
# define nodes of the extension
@knext.node(
name="Logistic Regression Learner",
node_type=knext.NodeType.SINK,
icon_path="icon.png",
category=supervised_category
)
...
class LogisticRegressionLearner():
...
@knext.node(
name="SVM Learner",
node_type=knext.NodeType.SINK,
icon_path="icon.png",
category=supervised_category
)
...
class SVMLearner():
...
@knext.node(
name="K-Means Learner",
node_type=knext.NodeType.SINK,
icon_path="icon.png",
category=unsupervised_category
)
...
class KMeansLearner():
...
@knext.node(
name="PCA Learner",
node_type=knext.NodeType.SINK,
icon_path="icon.png",
category=unsupervised_category
)
...
class PCALearner():
...
.
Defining the node’s configuration dialog
For the sake of brevity, in the following code snippets we omit repetitive portions of the code whose utility has already been established and demonstrated earlier. |
In order to add parameterization to your node’s functionality, we can
define and customize its configuration dialog. The user-configurable
parameters that will be displayed there, and whose values can be
accessed inside the execute
method of the node via self.param_name
,
are set up using the following parameter classes available in knext
:
-
knext.IntParameter
for integer numbers:-
Signature:
knext.IntParameter( label=None, description=None, default_value=0, min_value=None, max_value=None, since_version=None, )
-
Definition within a node/parameter group class:
no_steps = knext.IntParameter("Number of steps", "The number of repetition steps.", 10, max_value=50)
-
Usage within the
execute
method of the node class:for i in range(self.no_steps): # do something
-
-
knext.DoubleParameter
for floating point numbers:-
Signature:
knext.DoubleParameter( label=None, description=None, default_value=0.0, min_value=None, max_value=None, since_version=None, )
-
Definition within a node/parameter group class:
learning_rate = knext.DoubleParameter("Learning rate", "The learning rate for Adam.", 0.003, min_value=0.)
-
Usage within the
execute
method of the node class:optimizer = torch.optim.Adam(lr=self.learning_rate)
-
-
knext.StringParameter
for string parameters and single-choice selections:-
Signature:
knext.StringParameter( label=None, description=None, default_value="", enum: List[str] = None, since_version=None, )
-
Definition within a node/parameter group class:
# as a text input field search_term = knext.StringParameter("Search term", "The string to search for in the text.", "") # as a single-choice selection selection_param = knext.StringParameter("Selection", "The options to choose from.", "A", enum=["A", "B", "C", "D"])
-
Usage within the
execute
method of the node class:table[table["str_column"].str.contains(self.search_term)]
-
-
knext.BoolParameter
for boolean parameters:-
Signature:
knext.BoolParameter( label=None, description=None, default_value=False, since_version=None, )
-
Definition within a node/parameter group class:
output_image = knext.BoolParameter("Enable image output", "Option to output the node view as an image.", False)
-
Usage within the
execute
method of the node class:if self.output_image is True: # generate an image of the plot
-
-
knext.ColumnParameter
for a single column selection:-
Signature:
knext.ColumnParameter( label=None, description=None, port_index=0, # the port from which to source the input table column_filter: Callable[[knext.Column], bool] = None, # a (lambda) function to filter columns include_row_key=False, # whether to include the table Row ID column in the list of selectable columns include_none_column=False, # whether to enable None as a selectable option, which returns "<none>" since_version=None, )
-
Definition within a node/parameter group class:
selected_col = knext.ColumnParameter( "Target column", "Select the column containing country codes.", column_filter= lambda col: True if "country" in col.name else False, include_row_key=False, include_none_column=True, )
-
Usage within the
execute
method of the node class:if self.selected_column != "<none>": column = input_table[self.selected_column] # do something with the column
-
-
knext.MultiColumnParameter
for a multiple column selection-
Signature:
knext.MultiColumnParameter( label=None, description=None, port_index=0, # the port from which to source the input table column_filter: Callable[[knext.Column], bool] = None, # a (lambda) function to filter columns since_version=None, )
-
Definition within a node/parameter group class:
selected_columns = knext.MultiColumnParameter( "Filter columns", "Select the columns that should be filtered out." )
-
Setup within the
configure
method of the node class:# the multiple column selection parameter needs to be provided the list of columns of an input table self.selected_columns = input_schema_1.column_names
-
Usage within the
execute
method of the node class:for col_name in self.selected_columns: # drop the column from the table
-
All of the above have arguments label
and description
, which are
displayed in the node description in KNIME Analytics Platform, as well
as in the configuration dialog itself. Additionally, all parameter classes
have an optional argument since_version
, which can be used to specify
the version of the extension that the parameter was introduced in. Please
refer to the Versioning your extension section
below for a more detailed overview.
Parameters are defined in the form of class attributes inside the node class definition (similar to Python descriptors):
@knext.node(…)
…
class MyNode:
num_repetitions = knext.IntParameter(
label="Number of repetitions",
description="How often to repeat an action",
default_value=42
)
def configure(…):
…
def execute(…):
…
While each parameter type listed above has default type validation, they
also support custom validation via a property-like decorator notation.
By wrapping a function that receives a tentative parameter value, and
raises an exception should some condition be violated, with the
@some_param.validator
decorator, you are able to add an additional
layer of validation to the parameter some_param
. This should be done
below the definition of the parameter for which you are adding a
validator, and above the configure
and execute
methods:
@knext.node(…)
…
class MyNode:
num_repetitions = knext.IntParameter(
label="Number of repetitions",
description="How often to repeat an action",
default_value=42
)
@num_repetitions.validator
def validate_reps(value):
if value > 100:
raise ValueError("Too many repetitions!")
def configure(…):
…
def execute(…):
…
Parameter Visibility
By default, each parameter of a node is visible in the node’s configuration dialog. Parameters can be marked as advanced by setting is_advanced=True
, which will only show them once the user has clicked “Show advanced settings” in the configuration dialog.
Sometimes a parameter should only be visible to the user if another parameter has a certain value. For this, each parameter type listed above has a method rule
. In this method, one can specify a condition based on another parameter, and the effect that should be applied to this parameter when the condition becomes true.
@knext.node(args)
class MyNode:
string_param = knext.StringParameter(
"String Param Title",
"String Param Title Description",
"default value"
)
# this parameter gets disabled if string_param is "foo" or "bar"
int_param = knext.IntParameter(
"Int Param Title",
"Int Param Description",
).rule(knext.OneOf(string_param, ["foo", "bar"]), knext.Effect.DISABLE)
Currently this only supports conditions where another parameter exactly matches a value. Rules can only depend on parameters on the same level, not in a child or parent parameter group. |
See the full API documentation of the rule
method
here.
Parameter Groups
It is also possible to define groups of parameters, which are displayed
as separate sections in the configuration dialog UI. By using the
@knext.parameter_group
decorator with a
dataclass-like class
definition, you are able to encapsulate parameters and, optionally,
their validators into a separate entity outside of the node class
definition, keeping your code clean and maintainable. A parameter group
is linked to a node just like an individual parameter would be:
@knext.parameter_group(label="My Settings")
class MySettings:
name = knext.StringParameter("Name", "The name of the person", "Bario")
num_repetitions = knext.IntParameter("NumReps", "How often do we repeat?", 1, min_value=1)
@num_repetitions.validator
def reps_validator(value):
if value == 2:
raise ValueError("I don't like the number 2")
@knext.node(…)
…
class MyNodeWithSettings:
settings = MySettings()
def configure(…):
…
def execute(…):
…
name = self.settings.name
…
Another benefit of defining parameter groups is the ability to provide group validation. As opposed to only being able to validate a single value when attaching a validator to a parameter, group validators have access to the values of all parameters contained in the group, allowing for more complex validation routines.
We provide two ways of defining a group validator, with the values
argument being a dictionary of parameter_name
: parameter_value
mappings:
-
by implementing a
validate(self, values)
method inside the parameter group class definition:@knext.parameter_group(label=''My Group'') class MyGroup: first_param = knext.IntParameter(''Simple Int'',''Testing a simple int param'', 42) second_param = knext.StringParameter("Simple String", "Testing a simple string param", "foo") def validate(self, values): if values["first_param"] < len(values["second_param"]): raise ValueError("Params are unbalanced!")
-
by using the familiar
@group_name.validator
decorator notation with a validator function inside the class definition of the ``parent'' of the group (e.g. the node itself, or a different parameter group):@knext.parameter_group(label=``My Group'') class MyGroup: first_param = knext.IntParameter(``Simple Int'', ``Testing a simple int param'', 42) second_param = knext.StringParameter("Simple String", "Testing a simple string param", "foo") @knext.node(…) … class MyNode: param_group = MyGroup() @param_group.validator def validate_param_group(values): if values["first_param"] < len(values["second_param"]): raise ValueError("Params are unbalanced!")
If you define a validator using the first method, and then define another validator for the same group using the second method, the second validator will override the first validator. If you would like to keep both validators active, you can pass the optional override=False
argument to the decorator:@param_group.validator(override=False)
.
Intuitively, parameter groups can be nested inside other parameter groups, and their parameter values accessed during the parent group’s validation:
@knext.parameter_group(label="Inner Group")
class InnerGroup:
inner_int = knext.IntParameter("Inner Int", "The inner int param", 1)
@knext.parameter_group(label="Outer Group")
class OuterGroup:
outer_int = knext.IntParameter("Outer Int", "The outer int param", 2)
inner_group = InnerGroup()
def validate(self, values):
if values["inner_group"]["inner_int"] > values["outer_int"]:
raise ValueError("The inner int should not be larger than the outer!")
Node view declaration
You can use the @knext.output_view(name="", description="")
decorator to
specify that a node returns a view. In that case, the execute
method
should return a tuple of port outputs and the view (of type
knime.api.views.NodeView
).
from typing import List
import knime.extension as knext
import seaborn as sns
@knext.node(name="My Node", node_type=knext.NodeType.VISUALIZER, icon_path="icon.png", category="/")
@knext.input_table(name="Input Data", description="We read data from here")
@knext.output_view(name="My pretty view", description="Showing a seaborn plot")
class MyViewNode:
"""
A view node
This node shows a plot.
"""
def configure(self, config_context, input_table_schema)
pass
def execute(self, exec_context, table):
df = table.to_pandas()
sns.lineplot(x="x", y="y", data=df)
return knext.view_seaborn()
# If the node outputs tables, the output view must
# be the last element of the return value
#
# output_table = knext.from_pandas(df)
# return output_table, knext.view_seaborn()
#
# For multiple table outputs use
# return output_table_1, output_table_2, knext.view_seaborn()
Accessing flow variables
You can access the flow variables available to the node in both the
configure
and execute
methods, via the config_context.flow_variables
and exec_context.flow_variables
attributes respectively. The flow
variables are provided as a dictionary of flow_variable_name
: flow_variable_value
mappings, and support the following types:
-
bool
-
list(bool)
-
float
-
list(float)
-
int
-
list(int)
-
str
-
list(str)
By mutating the flow_variables
dictionary, you can access, modify, and
delete existing flow variables, as well as create new ones to be propagated
to downstream nodes.
Versioning your extension
As you continue to develop your extension after the initial release, you might extend the functionality of your nodes by adding or removing certain parameters. With the versioning capabilities of Python-based node extensions for KNIME Analytics Platform, you can ensure backward compatibility for your users.
As seen in the Python Node Extension Setup section,
the knime.yml
configuration file contains a version
field. This allows
you to assign a version to each iteration of your extension. How closely you
want to follow the semantic versioning scheme is
completely up to you, but we do require adherence to the following formatting-related
rule: versions must be composed of three non-negative numeric parts separated by dots
(e.g. 1.0.0
, 0.2.1
, etc.).
The version numbers are compared from left to right, i.e. 1.0.1 is newer than
1.0.0 , but older than 1.1.0 .
|
When adding a new parameter to a node, you should associate it with the corresponding
version of your extension. This is done using the since_version
argument that is
now available for all parameter types via the appropriate constructor (e.g. knext.IntParameter
),
as well as parameter groups via the @knext.parameter_group
decorator. If not specified,
the since_version
argument of a parameter or parameter group defaults to 0.0.0
,
which indicates that the parameter was available from the first iteration of the extension.
A common use-case of extension versioning is to facilitate backward compatibility when opening workflows that were created/saved with an older version of the extension installed on the machine. What KNIME Analytics Platform will try to achieve by default in this case, is to combine the values of the previously configured node settings that are still available in the current version of the extension with the newly added node settings, if any. The latter are then automatically set to their default values, and the node remains configured.
Sometimes the default value for a newly added node should be different than the default value
for a node that is loaded as part of an old workflow (for an example see double_param below).
In this scenario you can use a DefaultValueProvider instead of the default value.
The DefaultValueProvider is a function that given a Version produces the default value
of the parameter for that version of the extension. For old workflows it is called with the extension
version the workflow was saved with. For new workflows it is called with the current version of the
extension.
|
Here is a minimal functional example of a Python-based extension containing a single
node with a single parameter. Since the parameter is available from the initial release
of the extension, we can forgo setting the since_version
argument:
"""
My Extension | Version: 0.1.0 | Author: Jane Doe
"""
import knime.extension as knext
@knext.node(
"My Node",
knext.NodeType.SOURCE,
"..icons/icon.png",
"/"
)
@knext.output_table("Output Data", "Data generated by this node.")
class MyNode:
"""Short node description.
Long node description.
"""
my_param = knext.IntParameter(
"My Param",
"My int parameter.",
42,
)
def configure(self, config_context, input_table_schema):
return input_table_schema
def execute(self, exec_context, input_table):
df = input_table.to_pandas()
df['column1'] += self.my_param
return knext.Table.from_pandas(df)
During the next few releases of the extension, MyNode
is modified with an
addition of several new parameters:
"""
My Extension | Version: 0.5.0 | Author: Jane Doe
"""
import knime.extension as knext
@knext.node(
"My Node",
knext.NodeType.SOURCE,
"..icons/icon.png",
"/"
)
@knext.output_table("Output Data", "Data generated by this node.")
class MyNode:
"""Short node description.
Long node description.
"""
my_param = knext.IntParameter(
"My Param",
"My int parameter.",
42,
)
double_param = knext.DoubleParameter(
"My Double",
"Double parameter that strives to be Pi.",
# For old workflows the value must be 1 to stay backwards compatible
# but for new workflows we want the default to be 3.14
lambda v: 1 if v < knext.Version(0, 3, 0) else 3.14,
since_version="0.3.0",
)
string_param = knext.StringParameter(
"My String",
"An important string parameter to be turned into a flow variable.",
"Foo",
since_version="0.5.0",
)
def configure(self, config_context, input_table_schema):
return input_table_schema
def execute(self, exec_context, input_table):
df = input_table.to_pandas()
df['column1'] += self.my_param * self.double_param
exec_context.flow_variables['important_string'] = self.string_param
return knext.Table.from_pandas(df)
Now, if a user whose version of My Extension
is 0.5.0
opens a workflow containing
MyNode
that was configured/saved on a machine where the version of My Extension
was,
for instance, 0.2.0
, the node settings will automatically be adapted to contain the
previously configured value for my_param
, and the default values for double_param
and string_param
.
If the user were to execute the node without first reconfiguring it,
the execute
method would use those default values for the corresponding parameters.
Note how the default value of double_param
depends on the version in order to ensure that the node’s output does not change if the workflow is of an older version.
If the behaviour/functionality of the node has changed throughout the various releases
of the extension, and you would like to require users to reconfigure the node if certain
conditions are met, you can use the config_context.set_warning()
or exec_context.set_warning()
methods in the configure
and execute
methods of your node respectively to display
a yellow "warning" sign in the node status. Additionally, you can raise an exception
to further direct the user to reconfigure the node. For example:
import knime.extension as knext
@knext.node(
"My Node",
knext.NodeType.SOURCE,
"..icons/icon.png",
"/"
)
@knext.output_table("Output Data", "Data generated by this node.")
class MyNode:
"""Short node description.
Long node description.
"""
my_param = knext.IntParameter(
"My Param",
"My int parameter.",
42,
)
double_param = knext.DoubleParameter(
"My Double",
"Double parameter that strives to be Pi.",
lambda v: 1 if v < knext.Version(0, 3, 0) else 3.14,
since_version="0.3.0",
)
def configure(self, config_context, input_table_schema):
if self.my_param < 10:
config_context.set_warning("Please reconfigure the node.")
raise ValueError("My Param cannot be less than 10.")
return input_table_schema
def execute(self, exec_context, input_table):
df = input_table.to_pandas()
df['column1'] += self.my_param * self.double_param
return knext.Table.from_pandas(df)
Deprecation of nodes
Sometimes it is not possible to change a node and stay backwards compatible e.g. if an input or output port is added. If you find yourself in this scenario do the following:
-
Deprecate the old node by setting the
is_deprecated
argument totrue
in theknime.extension.node
decorator. The node is then no longer listed in the node repository but it can still be loaded in existing KNIME workflows in which it then is also marked as deprecated. -
Implement a new version of the node that has the same
name
argument in theknime.extension.node
decorator as the old node.
Don’t change the name of the Python class that implements your old node because this name is used as ID by the Analytics Platform to find the node. |
Improving the node description with Markdown
The description of your node, which is displayed in the Description area of KNIME Analytics Platform when a node is selected, is composed of multiple components. These components come from the descriptions you, as the developer, provide when defining the building blocks of the node, such as the input ports or the configuration parameters.
Keep in mind that at the first line of the description docstring, next to the three double quotes, you can provide a short description, which will be shown in the overview when clicking on a category in the node repository of the KNIME Analytics Platform. |
By including the markdown
Python package in the conda
environment associated with your node extension,
you can make use of Markdown syntax when writing
these descriptions to improve readability and the overall look of your nodes' documentation.
Below you can find a list of which Markdown syntax is supported for each node description element.
As KNIME Analytics Platform transitions to the Modern UI, we will work on extending our support for additional Markdown syntax. |
Element | Node description | Port description | Parameter description | Top-level parameter group description |
---|---|---|---|---|
✓ |
✗ |
✗ |
✗ |
|
✓ |
✓ |
✓ |
✓ |
|
✓ |
✓ |
✓ |
✓ |
|
✓ |
✓ |
✓ |
✓ |
|
✓ |
✓ |
✓ |
✓ |
|
✓ |
✓ |
✓ |
✓ |
|
✓ |
✓ |
✓ |
✗ |
|
✓ |
✓ |
✗ |
✗ |
|
✓ |
✓ |
✓ |
✓ |
|
✓ |
✗ |
✗ |
✗ |
Here is a functional example of using Markdown when writing a Python node:
import knime.extension as knext
@knext.parameter_group("Node settings")
class Settings:
"""
Settings to configure how the node should work with the provided **JSON** strings.
"""
class LoggingOptions(knext.EnumParameterOptions):
NONE = ("None", "Logging *disabled*.")
INFO = ("Info", "Allow *some* logging messaged to be displayed.")
VERBOSE = ("Verbose", "Log *everything*.")
logging_verbosity = knext.EnumParameter(
"Logging verbosity",
"Set the node logging verbosity during execution.",
LoggingOptions.INFO.name,
LoggingOptions,
)
discard_missing = knext.BoolParameter(
"Discard rows with missing values",
"""
Use this option to discard rows with missing values.
- If **enabled**, the node will ignore rows where an attribute of the JSON strings has missing value.
- If **disabled**, the node will keep such rows with the corresponding missing values.
""",
True,
)
@knext.node("JSON Parser", knext.NodeType.MANIPULATOR, "icon.png", main_category)
@knext.input_table(
"Input table",
"""
Input table containing JSON-encoded strings in each row.
Example format of the expected input:
```
{
"Konstanz": {
"population": 90,000,
"region": "Baden-Württemberg",
...
},
...
}
```
""",
)
@knext.output_table(
"Parsed JSON",
"Output table containing columns with the information extracted from the provided JSON string.",
)
class JsonParser:
"""Node for parsing JSON strings.
Given a table containing [JSON](https://developer.mozilla.org/en-US/docs/Glossary/JSON) strings, this node attempts to parse them and
outputs the extracted information in a new table.
| Allowed | Not allowed |
| ------- | ----------- |
| JSON | YAML |
"""
settings = Settings()
def configure(self, config_context, input_table_schema):
# configuration routine
# ...
return input_table_schema
def execute(self, exec_context, input_table):
# execution routine
# ...
return input_table
Below is the resulting node description as seen in KNIME Analytics Platform:
The descriptions of individual node parameters can additionally be accessed from within the configuration dialog of the node:
Share your extension
You can share your extension in two ways. One is to bundle the extension to get a local update site which can be shared with your team or used for testing. The other is to publish it on KNIME Community Hub and make it available for the community. Either of the two options need some setup details. In this section, the setup and the two options will be explained.
Setup
To ensure that the users you have shared your extension with are able to utilise its
functionality fully and error-free, we bundle the source files together with the
required packages using conda
as the bundling channel.
The knime.yml
file (refer to the
Python Node Extension Setup
section for an example of this configuration file) contains the information required
to bundle your extension, including:
-
extension_module
: the name of the.py
file containing the node definitions of your extension. -
env_yml_path
: the path to the.yml
file containing the configuration of theconda
environment that is used with your extension (see example below).
These YAML files can be automatically generated by activating the desired environment, and running one of the following commands, which will result in configuration files of various strictness:
-
conda env export > <env_yml_filename.yml>
, which will contain all the dependencies with their full version and build numbers. Not recommended -
conda env export --from-history > <env_yml_filename.yml>
, which will reduce the list of dependencies down to the packages that you have manually installed in the environment. Note that this option does not preserve the list of manually specified channels when installing packages (e.g. conda-forge), so you might have to add them yourself. -
conda env export | cut -f 1 -d "=" | grep -v "prefix" > <env_yml_filename.yml>
, which will preserve the list of custom channels used when installing packages, as well as the full list of dependencies, without strict versions specified. -
conda env export --no-builds | grep -v "prefix" > <env_yml_filename.yml>
, same as the above command, but with package versions specified (excluding build numbers).
Note that, in addition to packages installed with conda
, you are also able
to install packages from PyPI via pip
. When done from within your activated
conda
environment, such packages are also automatically included in the
YAML configuration file generated with the above commands.
environment.yml
:
name: knime-python-scripting
channels:
- conda-forge
- knime
dependencies:
- python=3.11 # base dependency
- knime-python-base>=5.4 # base dependency
- knime-extension>=5.4 # base dependency
- another-package=1.0.1 # example
- yet-another-package # example
- pip:
- img2text # example
- pillow # example
OS-specific environments
Since KNIME Analytics Platform is available on Windows, Linux, and macOS,
you should try your best to ensure that your Python extension performs
as expected on all platforms. To achieve this, you can generate OS-specific
YAML files that include versions/replacements of packages that are guaranteed
to be available on this particular OS by, for instance, searching the
Anaconda package repository with the
Platform filter set to the desired OS (e.g. osx-64
for Intel-based
Mac machines), and correspondingly building the environment YAML file.
When specifying the environment YAMLs in the knime.yml
file of your Python
extension, you can use the following format to include different environment
configuration files for different operating systems, which the KNIME Analytics
Platform will then appropriately use together with your extension:
Support for Apple Silicon-specific environments is available starting from the 4.7 release of KNIME Analytics Platform. |
knime.yml
:
...
env_yml_path:
osx-64: <env_for_intel_mac>
osx-arm64: <env_for_arm_mac> # available starting from KNIME Analytics Platform 4.7
linux-64: <env_for_linux>
win-64: <env_for_win>
...
Lastly, a new extension needs a LICENSE.TXT
that will be displayed during the installation process.
Option 1: Bundling a Python extension to share a zipped update site
Once you have finished implementing your Python extension, you can bundle it, together with the appropriate
conda
environment, into a local update site. This allows other users to install your extension in the KNIME
Analytics Platform.
Follow the steps of extension setup
.
Once you have prepared the YAML configuration file for the environment used by your extension, and have set
up the knime.yml
file, you can proceed to generating the local update site.
We provide a special conda
package, knime-extension-bundling
, which contains the necessary tools to
automatically build your extension. Run the following commands in your terminal (Linux/macOS) or Anaconda
Prompt (Windows). They will setup a conda
environment, which gives the tools to bundle extensions. Then the
extension will be bundled.
By default, the conda environment will bundle the extension for the latest KNIME Analytics Platform version.
If you want to bundle the extension for a specific KNIME version, you have to install the corresponding conda package.
You can specify the version when you create the environment , e.g. knime-extension-bundling=5.4 . When building an older
version, the environment YAML files must contain the corresponding versions of the knime-python-base and
knime-extension packages, e.g.- knime-python-base=5.3 when bundling for version 5.3.
|
-
Create a fresh environment prepopulated with the
knime-extension-bundling
package:conda create -n knime-ext-bundling -c knime -c conda-forge knime-extension-bundling=5.4
-
Activate the environment:
conda activate knime-ext-bundling
-
With the environment activated, run the following command to bundle your Python extension:
-
macOS/Linux:
build_python_extension.py <path/to/directoryof/myextension/> <path/to/directoryof/output>
-
Windows:
build_python_extension.bat <path/to/directoryof/myextension/> <path/to/directoryof/output>
where
<path/to/directoryof/myextension/>
is the path to the directory containing theknime.yml
file, and<path/to/directoryof/output>
is the path to the directory where the bundled extension repository will be stored.Further instructions are given by
build_python_extension.py --help
(macOS, Linux) orbuild_python_extension.bat --help
(Windows) and will be outlined upon execution of the script.
The bundling process can take several minutes to complete. -
-
Add the generated repository folder to KNIME AP as a Software Site in File → Preferences → Install/Update → Available Software Sites
-
Install it via File → Install KNIME Extensions
The generated repository can now be shared with and installed by other users.
Option 2: Publish your extension on KNIME Community Hub
Once you have finished implementing your Python extension, you can share it, together with the appropriate
conda
environment, to KNIME Community Hub.
Provide the extension
Follow the steps of extension setup
to prepare the environment.yml
or some other
yml
defining your Python environment and the knime.yml
.
Upload your extension into a Git repository, where the knime.yml
is found top-level. A config.yml
is not
needed.
Some recommended project structure:
https://github.com/user/my_knime_extension
├── icons
│ └── my_node_icon.png
├── knime.yml
├── LICENSE.txt
├── environment.yml
└── my_extension.py
Write a test workflow
-
Install the
KNIME Testing Framework
to your KNIME Analytics Platform (KAP) -
Create a test workflow (see https://www.knime.com/automated-workflow-testing-and-validation for details)
-
Test your extension against the test workflow: does it check your functionality and behaves as expected?
Contribute
Follow the steps in the following guide: Publish Your Extension on KNIME Community Hub
Lean back, clean up
-
Wait for us to come back to you
-
If it is available on the nightly experimental community extension Hub, please test it again (with your test workflow) by using the nightly experimental update site: https://update.knime.com/community-contributions/trunk (for now, every Python extension will stay on that site)
-
Upload the test workflow onto the Community Workflow Server. You can access the server via the KNIME Explorer view. If you don’t have a mount point entry for the community server yet, click on the button at the top-right of the view and then on Configure Explorer settings in the appearing dialog. Now create a new mount point with a custom ID and KNIME Community Server as mount point type. You can log into the server using your forum credentials, if you got your requested
community contributor status
. Create a new workflow group inside Testflows/trunk, give it a meaningful name, and finally upload your workflow(s) into this group. Please make sure that the permissions on the group and the workflow(s) allow read access for everyone.
Customizing the Python executable
Some extensions might have additional requirements that are not part of
the bundled environment e.g. in case of third party models. For these
extensions, it is possible to overwrite the Python executable used for
execution. This can be done via the system property
knime.python.extension.config
that has to point to a special YAML file
on disc. Add it to your knime.ini with the following line:
-Dknime.python.extension.config=path/to/your/config.yml
The forward slash / has to be used on all OS, also on Windows.
|
The format of the YAML is:
id.of.first.extension:
conda_env_path: path/to/conda/env
id.of.second.extension:
python_executable: path/to/python/executable
You have two options to specify a custom Python exectuable:
-
Via the
conda_env_path
property (recommended) that points to aconda
environment on your machine. -
Via the
python_executable
property that points to an executable script that starts Python (see Manually configured Python environments section in KNIME Python Integration Guide for more details).
If you specify both, then conda_env_path
will take
precedence. It is your responsibility to ensure that the Python you
specified in this file has the necessary dependencies to run the
extension. As illustrated above, you can overwrite the Python executable
of multiple extensions.
Registering Python extensions during development
In order to register a Python extension you are developing, you can add
it to the knime.python.extension.config
YAML explained above by adding
a src property:
id.of.your.dev.extension:
src: path/to/your/extension
conda_env_path: path/to/conda/env
debug_mode: true
Note that you have to specify either conda_env_path
or
python_executable
because the Analytics Platform doesn’t have a
bundled environment for your extension installed. For debugging it is
also advisable to enable the debug mode by setting debug_mode: true
.
The debug mode disables caching of Python processes which allows some of
your code changes to be immediately shown in the Analytics Platform.
Those changes include:
-
Changes to the execute and configure runtime logic.
-
Changes to existing parameters e.g. changing the
label
argument. -
Other changes, such as adding a node or changing a node description, require a restart of the Analytics Platform to take effect.
-
Last but not least, fully enabling and disabling the debug mode also requires a restart.
Other Topics
Logging
You can use the logging
Python module to send warnings and errors to the KNIME Analytics
Platform console. By going to File → Preferences → KNIME → KNIME
GUI, you can choose the Console View Log Level. Each consecutive level
includes the previous levels (i.e. DEBUG
will also allow message from
INFO
, WARN
, and ERROR
to come through in the console, whereas
WARN
will only allow WARN
and ERROR
levels of messages).
In your Python script, you can initiate the logger, and use it to send out messages to the KNIME Analytics Platform console as follows:
# other various imports including knime.extension
import logging
LOGGER = logging.getLogger(__name__)
# your node definition via the knext decorators
class MyNode:
# your configuration dialog parameter definitions
def configure(…):
…
LOGGER.debug("This message will be displayed in the KNIME Analytics Platform console at the DEBUG level")
LOGGER.info("This one will be displayed at the INFO level.")
LOGGER.warning("This one at the WARN level.")
LOGGER.error("And this will be displayed as an ERROR message.")
…
def execute(…):
…
LOGGER.info("Logger messages can be inserted anywhere in your code.")
…
Gateway caching
In order to allow for a smooth user experience, the Analytics Platform caches the gateways used for non-execution tasks (such as the spec propagation or settings validation) of the last used Python extensions. This cache can be configured via two system properties:
-
knime.python.extension.gateway.cache.size
: controls for how many extensions the gateway is cached. If the cache is full and a gateway for a new extension is requested, then the gateway of the least recently used extension is evicted from the cache. The default value is 3. -
knime.python.extension.gateway.cache.expiration
: controls the time period in seconds after which an unused gateway is removed from the cache. The default is 300 seconds.
The debug_mode: true
propertly of config.yml
discussed before
effectively disables caching for individual extensions. By default,
all extensions use caching.
Troubleshooting
In case you run into issues while developing pure-Python nodes, here are some useful tips to help you gather more information and maybe even resolve the issue yourself. In case the issues persist and you ask for help, please include the gathered information.
Please have a look at the KNIME Log. |
Have also a look at the troubleshoot section of the Python integration guide. |
Find debug information
Resourceful information helps in understanding issues. Relevant information can be obtained in the following ways.
Accessing the KNIME Log
The knime.log
contains information logged during the execution of nodes. To obtain it, there are two ways:
-
In the KNIME Analytics Platform:
View → Open KNIME log
-
In the file explorer:
<path-to-knime-workspace>/.metadata/knime/knime.log
Not all logged information is required. Please restrict the information you provide to the issue. If the log file does not contain sufficient information, you can change the logging verbosity in File → Preferences → KNIME
. You can even log the information to the console in the KNIME Analytics Program: File → Preferences → KNIME → KNIME GUI
.
Information about the Python environment
If conda
is used, obtain the information about the used Python environment <python_env>
via:
-
conda activate <python_env>
-
conda env export
How to update Python version
In step 4 of the tutorial an environment is created which you use for your extension.
Three modules are specified for the installation:
-
knime-extension
brings in all the necessary API files such that you can use code-completion in your editor, if the environment is activated there. -
knime-python-base
is a metapackage which brings in dependencies like pyarrow and pandas etc, which are necessary for interacting with the KNIME Analytics Platform. If you look at the files on Anaconda.org you see that we provide knime-python-base up to Python 3.11. -
Python lets you specify the version. as you can see in 2., the version range made available by
knime-python-base
is 3.8-3.11.
You can create an environment with a more recent Python version as follows:
conda create -n my_python_env python=3.11 knime-python-base knime-extension -c knime -c conda-forge
Develop multiple extensions at once
If you want to develop and test multiple extensions simultaneously in your KNIME Analytics Platform, you can alter the config.yml
(see step 5 of the tutorial)to contain the necessary information of additional extensions like this:
<first_extension_id>:
src: <path/to/folder/of/first_extension>
conda_env_path: <path/to/my_python_env>
debug_mode: true
<second_extension_id>:
src: <path/to/folder/of/second_extension>
conda_env_path: <path/to/my_other_python_env>
debug_mode: true
The indentation is necessary and needs to be the same in every indented line, e.g. 2 or 4 spaces. |
Errors during load
If during development you get an error similar to
Loading model settigns failed: Parameter missing for key <some_key>
then this is probably because you freshly introduced the parameter. Re-executing the node should solve this. Alternatively, drag and drop the node again from the node repository.
During devleopment, you need to drag and drop the nodes always into your workflow whenever you change someting outside the execute or configure method.
|
Column is of type long, but int was wanted
Due to inconsistencies of the different Operating Systems, integer columns in the output table can be of type long. To prevent that, follow this example:
def execute(self, exec_context, input_table):
import numpy as np
df = input_table.to_pandas()
# Let's assume df has a column 'column1'
df['column1'] = df['column1'].astype(np.int32)
return knext.Table.from_pandas(df)
LZ4/jnijavacpp.dll/Columnar Table Backend error
On Windows, the following two errors can happen if you have two KNIME Analytics Platform versions open and both use the Columnar table backend. Close both and start only one.
ArrowColumnStoreFactory : : : Failed to initialize LZ4 libraries. The Columnar Table Backend won't work properly.
java.lang.UnsatisfiedLinkError: java.io.FileNotFoundException: C:...\.javacpp\cache\windows-x86_64\jnijavacpp.dll (The process cannot access the file because it is being used by another process)
ERROR : KNIME-Worker-3-Data Generator 3:18 : : Node : Data Generator : 3:18 : Execute failed: Unable to create DataContainerDelegate for ColumnarTableBackend.
java.lang.IllegalStateException: Unable to create DataContainerDelegate for ColumnarTableBackend.
at org.knime.core.data.columnar.ColumnarTableBackend.create(ColumnarTableBackend.java:115)
...
...
...
Caused by: java.lang.UnsatisfiedLinkError: java.io.FileNotFoundException: C:...\.javacpp\cache\windows-x86_64\jnijavacpp.dll (The process cannot access the file because it is being used by another process)
Could not create instance error
The following error can appear if the extension was built with build_python_extension
for a newer KNIME Analytics Platform (KAP) version. Run the build_python_extension
script with the parameter for the specific KAP version or an older KAP version, e.g. build_python_extension.py --knime-version 5.4
.
ERROR CoreUtil Could not create instance of node org.knime.python3.nodes.extension.ExtensionNodeSetFactory$DynamicExtensionNodeFactory: Could not initialize class org.knime.python3.nodes.CloseablePythonNodeProxy
SSL error during execution
If you encounter an SSL error during the execution of a node, this might be due to the use of a self-signed certificate. If other nodes such as the GET Request node work, but the Python node does not, you can configure the Python nodes to trust the same certificates as the KNIME Analytics Platform. To do this, add the following line to your knime.ini
file:
-Dknime.python.cacerts=AP
This will point the CA_CERTS
and REQUESTS_CA_BUNDLE
environment variables to a newly created CA bundle that contains the certicate authorities that the KNIME Analytics Platform trusts.
The Python nodes will then trust the same certificates as the KNIME Analytics Platform.
Installation Troubleshooting
This chapter addresses common installation challenges associated with our Python-based KNIME Extensions. It provides solutions and advice to help users manage and resolve these issues effectively, aiming for a straightforward setup process.
Offline installation
For performance, we no longer bundle Python packages in Python-based extensions. Therefore, if you wish to install Python-based extensions in an offline ("air-gapped") environment, please follow these steps in addition to adding an offline update site:
-
Install/Run a (temporary) KNIME Analytics Platform on a system that has internet access.
-
Install all wanted extensions.
-
Navigate to the preferences page "Python-based Extensions" via the cogwheel (or, in the classic UI: File → Preferences → KNIME → Python-based-Extensions) and click "Download required packages for offline installation to". Select an empty folder into which the packages will be saved. After selecting a folder, KNIME will collect the required Python packages and download them to the chosen folder.
-
After the download completes, copy this folder to the target offline system.
-
On the target offline system set the environment variable
KNIME_PYTHON_PACKAGE_REPO_URL
to the folder with the downloaded packages. -
Fully close KNIME. After starting up again, KNIME will now use the provided packages for the installation of Python-based extensions.
If you are unsure if this procedure is necessary for the desired Python-based extensions just try to run the installation on the target offline system without setting the environment variable. The installation will fail with an error linking to this documentation section if the steps above are required. Alternatively, run steps 1-3 and check if any packages were downloaded. |
Technical detail: Python-based extensions set up a conda environment with the necessary conda and pip packages during installation. These packages are either bundled with the extension or downloaded during installation. If the extension bundles the packages it is possible to install it from a zipped update-site on a system that has no internet access. If the extension does not bundle the packages the extra steps described above are required for an offline installation. |
Custom conda environment location in case of Windows long path installation problems
Python-based extensions install a dedicated conda environment containing the Python packages required
for this extension. By default, KNIME will create these conda environments
at the location: '<KNIME-HOME>/bundling/envs/<EXTENSION-NAME>' for Linux and Mac and
'<KNIME-HOME>\bundling\envs\<EXTENSION-NAME>' for Windows. However, it is possible to
change the directory where the conda environments are created by setting the environment variable
KNIME_PYTHON_BUNDLING_PATH
to the desired directory. This can be useful to mitigate installation
problems due to the limitation of path lengths in Windows.
Conda environments located at this path will be overwritten when installing an extension with the same name. Also when uninstalling an extension, the conda environment will be deleted. |
When changing this environment variable, previously installed extensions that rely on a Python environment may stop working. It is recommended that you only set this variable for new KNIME installations. |
Proxy Issues
If you are behind a proxy, you might encounter issues when trying to install Python-based KNIME extensions.
As Python-based KNIME extensions are installed via conda, you need to set the proxy settings in the conda configuration.
The conda configuration file is located in the ~/.condarc
file. More information about this file can be found in the
following tutorial: How to use CondaRC.
To make sure the Python-based extension installation respects your proxy settings, we recommend adding the following lines to the ~/.condarc
file:
proxy_servers:
http: http://domainname\username:password@proxyserver:port
https: http://domainname\username:password@proxyserver:port
These will ensure that the proxy settings are correctly set for conda. Proxy settings from KNIME will unfortunately not be propagated for the installation, as this could overwrite the existing proxy settings for conda.
Do not use tabs, there must be a space between http: and http://…; . If you don’t need a username and password for the proxy, leave out the username:password .
|
If you run into the following error:
critical libmamba Download error (35) SSL connect error [https://conda.anaconda.org/conda-forge/noarch/<some package here...>]
schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.
try adding ssl_no_revoke: true
to your ~/.condarc
file. The error means that your proxy is not configured to forward SSL certificate revocation checks.
If none of these tips work, you can also perform an offline installation of the extension as described in: Offline Installation.